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Issues list

resume from specific process (as in Snakemake)
#6149 opened May 31, 2025 by nick-youngblut
Nextflow can not correctly judge the completeness of process, so collect() gathers incomplete data triage/needs-information
#6141 opened May 30, 2025 by gongyh
1
conda environments recreated on every run with Seqera Platform (-with-tower) software/conda
#6140 opened May 30, 2025 by aringeri
3
caching with module binaries files is not identifying changes
#6128 opened May 27, 2025 by ronp-cytoreason-com
4
nextflow lint success message does not reset color
#6127 opened May 27, 2025 by ScottNortonPhD
2
Retry Mechanism for GitHub Connectivity Failures in Automated Workflows software/git
#6115 opened May 22, 2025 by markpanganiban
1
@jorgee
Incorrect hash when staging repository directory
#6112 opened May 22, 2025 by DriesSchaumont
1
1
URL is de-encoded during resume, leading to pipeline failures and re-staging of files
#6109 opened May 21, 2025 by prototaxites
java.util.ConcurrentModificationException when using array jobs in Slurm
#6108 opened May 21, 2025 by xsvato01
Google Batch: file().listFiles() fails when trying to read an updating directory
#6106 opened May 20, 2025 by VasLem
Support transitive includes lang/modules
#6104 opened May 20, 2025 by henrjk
nf-test.config should be excluded from linting
#6101 opened May 19, 2025 by adamrtalbot
1
Closure defined by anonymous assignment has contradictory linting outcome
#6095 opened May 16, 2025 by ScottNortonPhD
2
Support for Pixi good first issue
#6092 opened May 16, 2025 by adamrtalbot
3
Add decompress: true option to Path.size() method
#6086 opened May 15, 2025 by prototaxites
3
GCP Batch jobs => mv: failed to close
#6080 opened May 14, 2025 by nick-youngblut
2
Cleanup after failed step
#6077 opened May 14, 2025 by bartcharbon
Secrets cannot contain \n secrets
#6073 opened May 13, 2025 by long-matt-r
Staging /dev causes apptainer/singularity processes to fail. software/singularity
#6072 opened May 13, 2025 by alanhoyle
2
nextflow secrets set does not work with values starting with -- secrets
#6071 opened May 13, 2025 by long-matt-r
‘Cannot find target plugin’ error after Nextflow update
#6068 opened May 13, 2025 by jsitarova-dnanexus
docs on what can be used for path(stageName) docs
#6051 opened May 7, 2025 by nick-youngblut
@christopher-hakkaart
6
docs on using closure for path param in publishDir lang/config
#6048 opened May 7, 2025 by nick-youngblut
1
Lineage: Accept run names planned
#6043 opened May 7, 2025 by ewels
1
Not loggin nextflow.config.ConfigBuilder trace when required
#6039 opened May 6, 2025 by kdesnos
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